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          Application Brief 52300
        
        
          Thermo Fisher
        
        
          Scientific,Austin,TX
        
        
          USA is ISO Certified.
        
        
          Automatic Retention Time Update
        
        
          Since you now have a retention time-based instrument
        
        
          method to acquire your transitions, and a TraceFinder
        
        
          software method to process the data, how do you
        
        
          accommodate the clipping  of your column and all your
        
        
          retention times change? If you sync the TraceFinder
        
        
          method with the acquisition method, all you need to do is
        
        
          run a standard and update your retention times in Data
        
        
          Review (Figure 4). Most of these updated retention times
        
        
          will be determined automatically through automatic peak
        
        
          detection. The next time you run the method, the
        
        
          acquisition list will be updated with the new retention
        
        
          times, eliminating most of the manual work previously
        
        
          needed to maintain a complex SRM instrument method.
        
        
          For these complex methods, this can lead to a major time
        
        
          savings in your daily work.
        
        
          Compound-Based Scanning
        
        
          Having the ability to sync the instrument method and the
        
        
          processing method also allows for easy creation of subsets
        
        
          of acquisition lists from the CDS. For instance, if you have
        
        
          a large multi-residue method available, but you are only
        
        
          interested in the organo-chlorine pesticides instead of the
        
        
          full set for a particular analysis, simply select the category
        
        
          for organo-chlorines when creating a processing method
        
        
          from the CDS. This will not only create a processing
        
        
          method with your selected compounds, but it will also
        
        
          create the corresponding acquisition list, limiting the list
        
        
          to just those compounds. This limited transition list will
        
        
          increase the dwell time of the selected transitions, and
        
        
          thus further increase the sensitivity of the TSQ 8000
        
        
          GC-MS/MS system.
        
        
          Figure 3. SRM, SIM and full scan rates based on peak width and
        
        
          scans across the peak
        
        
          A
        
        
          B
        
        
          Figure 4. With Method Sync, when you adjust retention times through
        
        
          automatic processing in Data Review, retention times will also be
        
        
          updated in your timed acquisition method. You can update the
        
        
          retention times one at a time while you QC your data in Data Review
        
        
          (a), or adjust retention times en masse from an acquired sample (b).
        
        
          AB52300_E 06/12S