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          AB52298_E 05/12S
        
        
          Application Brief 52298
        
        
          Step 2: Product Ion Study
        
        
          Now that you have selected your precursor masses, it is
        
        
          time to find your product masses. AutoSRM will signal
        
        
          the TSQ 8000 system to acquire product ion scans of your
        
        
          precursor masses at three collision energies. You are not
        
        
          required to set up any methods, sequences or data layouts
        
        
          to accomplish this. AutoSRM automatically takes care of
        
        
          it. Along with your chromatographic peak and your product
        
        
          ion spectra, you are presented with a table of the most
        
        
          intense product ion masses from which to choose. Again,
        
        
          if you choose, you can have AutoSRM pick for you.
        
        
          From here you can export your transition list to your
        
        
          instrument method, or you can send your selected
        
        
          transitions to an SRM optimization study for further
        
        
          optimization.
        
        
          Step 3: SRM Optimization Study
        
        
          The final step in SRM development is the SRM optimiza-
        
        
          tion step. Now that you have selected your precursor and
        
        
          product masses, AutoSRM will acquire those transitions
        
        
          at multiple collision energies. Because of the fast scanning
        
        
          capabilities of the TSQ 8000 GC-MS system, three
        
        
          transitions per compound, each at 10 unique collision
        
        
          energies, can be analyzed in a single injection. This will
        
        
          give you a well defined maximum for your collision
        
        
          energy, as shown in Figure 2 below.
        
        
          Once complete, AutoSRM allows the simple creation of
        
        
          the TSQ 8000 instrument method to be ready for routine
        
        
          analysis.
        
        
          Figure 2. Collision Energy optimization curve for the
        
        
          
            m/z
          
        
        
          180 > 109 transition of 1, 2, 3-Tricholobenzene, showing an optimum collision
        
        
          energy of 25 eV. At this point in the process, the optimized SRM transitions can be exported to your instrument method.
        
        
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          San Jose, CA USA is ISO Certified.
        
        
          thermoscientific.com
        
        
          ©2012 Thermo Fisher Scientific Inc. All rights reserved. ISO is a trademark of the International Standards Organization. All other trademarks are the property of
        
        
          Thermo Fisher Scientific Inc. and its subsidiaries. This information is presented as an example of the capabilities of Thermo Fisher Scientific Inc. products. It is
        
        
          not intended to encourage use of these products in any manners that might infringe the intellectual property rights of others. Specifications, terms and pricing
        
        
          are subject to change. Not all products are available in all countries. Please consult your local sales representative for details.
        
        
          Thermo Fisher
        
        
          Scientific,Austin,TX
        
        
          USA is ISO Certified.